Step 4: Install the Manta Module

Inside your new pipeline folder, run:

nf-core modules install manta/germline

This will add the module to your project and update your modules.json.

💡 Notice at the end of the GIF: it shows how to include the module in your workflow using the following line:

include { MANTA_GERMLINE } from `../modules/nf-core/manta/germline/main`

Now let's build a simple pipeline using this Manta module.